Epstein–Barr virus-encoded small RNAs
| EBER1 | |
|---|---|
 |
|
| Conserved secondary structure of EBER1. | |
| Identifiers | |
| Symbol | EBER1 |
| Rfam | RF01789 |
| Other data | |
| RNA type | Gene |
| Domain(s) | Epstein–Barr virus |
The Epstein–Barr virus-encoded small RNAs (EBERs) are small non-coding RNAs localized in the nucleus of human cells infected with Epstein–Barr virus (EBV). First discovered in 1981, EBERs are the most abundant RNAs present in infected cells.[1] EBERs interact with several host proteins to form ribonucleoprotein (RNP) complexes. Although a precise function for EBERs remains elusive, roles in transformation and oncogenesis are proposed.
Background
EBER1 and EBER2 are short, 167 and 172 nucleotides in length respectively, nuclear-enriched non-coding RNAs. These two RNAs are transcribed by the host's RNA polymerase III during latent infection of EBV.[2][3]
EBERs 1 and 2 can be deleted from the viral genome without noticeable phenotypic changes, though this has never been found deleted in nature.[2] EBER expression alone can induce tumours in severe combined immunodificient mice.[4][5]
EBER1
EBER1 associates with human ribosomal protein L22[6] and causes this protein to move from the nucleolus to the nucleoplasm.[7] EBER1 also specifically interacts with at least three host hnRNPs (A1, A2/B1 and D/AUF1).[8]
EBER2
Similar to EBER1, EBER2 is very highly expressed in latently infected cells. Unlike EBER1, the sequence of EBER2 is less conserved in related herpesviruses (~50% conservation). However, the secondary structure of EBER2 is highly conserved (see Figure 1). EBER2 is only known to bind cellular proteins (specifically, the La domain) at its terminal stretch of repeated uridines; however, it is believed that the other features of EBER2, particularly its two long and highly conserved stem-loops, may also serve as binding sites for yet unknown proteins.[9]
References
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<references />, or <references group="..." />External links
- Page for Human herpesvirus 1 small nucleolar RNA at Rfam
- Page for EBER1 at Rfam
- Page for v-snoRNA1 at Rfam
- Page for IRES_EBNA at Rfam
- Epstein–Barr virus stable intronic sequence RNAs
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